YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9744, orf1...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.86
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.86
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	174	0.89
Transmembrane Helix	175	199	0.85
Cytoplasmic	200	212	0.71
Transmembrane Helix	213	234	0.83
Non-Cytoplasmic	235	366	0.93
Transmembrane Helix	367	388	0.91
Cytoplasmic	389	414	0.92
Transmembrane Helix	415	437	0.88
Non-Cytoplasmic	438	443	0.79
Transmembrane Helix	444	468	0.87
Cytoplasmic	469	505	0.98
Transmembrane Helix	506	526	0.94
Non-Cytoplasmic	527	533	0.84
Transmembrane Helix	534	554	0.90
Cytoplasmic	555	560	0.89
Transmembrane Helix	561	581	0.93
Non-Cytoplasmic	582	597	0.80
Transmembrane Helix	598	622	0.86
Cytoplasmic	623	718	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIISKSSILV IWFTFLVSIV NGSRYIKSSS LLTCMENSQF TASFFDVIFY PGNNTVDFDV  60
   61 LAISTIDNRT VGVNVNVIAY GLNVLQRNIS LCDISYTGST GAQNDPLCPI NNGHLDVHSS 120
  121 YTLGSSVTKD IPGIAYTIPD LDARVRAVIY DTQTYEQLAC VEATLSNGKT VQTKYAGWPI 180
  181 AAVSGLGVIT SGVISIIGYS NTAAHIASNS MSLFVYFQSL AVTAMMAVAR TPPLAAAWAQ 240
  241 NFMWSLGVVR VGFVQDIANW YLQATGGTPT DILKSRYLSI SVQKFVKKFI KRSAMAIAEH 300
  301 SPEFMTHLTK RINVSLDTES IGALDSDLYT TNEKSGESSG KILVLRGIQR VAYLSNIEIT 360
  361 DMFMTSIQFL LFFVFVVLVC LMAFKAIIEI LVRSKIIKEG KFKEYRRQWA SIIKGTNYRI 420
  421 LMLALPQIGL FCIWEFTVRD SAGIVVVAVF MLAVTAILLL QAAVRVCLLG TKSVREYKNP 480
  481 AYLLFGDRKF LNRFGFLYFQ YRADKYWYIF VSTTYIFLKS LIVAVLQNHG KPQSVIVWAI 540
  541 ELIHLVVLIW IRPFMDKRTN VFNIIISIMN FINALFFMFF SDVFGQPSVV SSMMAVVYFI 600
  601 LNAVFALFLL LFTIITCILA LLRDNPDSQY QPMRDDRVSF LNRQASRSDV IGKNNPRNGK 660
  661 DSELADLGKT AMMGHENRAR EGDTAYQDSN SYDEDSLYFR RRAENEQEGY SNTYGPRN