YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9725, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.99
Transmembrane Helix	56	76	0.94
Non-Cytoplasmic	77	95	0.90
Transmembrane Helix	96	116	0.90
Cytoplasmic	117	122	0.86
Transmembrane Helix	123	144	0.86
Non-Cytoplasmic	145	151	0.75
Transmembrane Helix	152	174	0.91
Cytoplasmic	175	183	0.80
Transmembrane Helix	184	202	0.93
Non-Cytoplasmic	203	215	0.75
Transmembrane Helix	216	240	0.87
Cytoplasmic	241	274	0.94
Transmembrane Helix	275	295	0.94
Non-Cytoplasmic	296	304	0.78
Transmembrane Helix	305	324	0.95
Cytoplasmic	325	342	0.86
Transmembrane Helix	343	365	0.86
Non-Cytoplasmic	366	382	0.82
Transmembrane Helix	383	403	0.95
Cytoplasmic	404	409	0.80
Transmembrane Helix	410	429	0.94
Non-Cytoplasmic	430	435	0.79
Transmembrane Helix	436	457	0.93
Cytoplasmic	458	477	0.87
Transmembrane Helix	478	500	0.77
Non-Cytoplasmic	501	547	0.75
Transmembrane Helix	548	567	0.90
Cytoplasmic	568	604	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSYQSSNNH SSEEDKHLSG DEKTFSPSDI VEKAIVEEKS IGVEKAEILA NQWKHTFWFK  60
   61 LLLGFSAFLC GYAYGLDSQT RYVYTAYATA SWSEHSLLTT VNAITGVVAA ASQPVYARLS 120
  121 DVLGRLELFI VAVLFYVVGT IIECQSPTIN AYVAGAVLFQ IGYSGIIIML LFILSDFSSL 180
  181 RWRLFFTLCP SFPFIINTWI SGNVTAAVGT RWKWGIGMWA FILPLSCIPL VCCMIHMRWL 240
  241 AGKTEEWRVF KQRKTKFQEL GVAGFSKYLF WRLDVIGLLL LTVSLGCLLV PLTLAGGIKE 300
  301 TWKKAHIIVP IVIGGVLIPV FLLWEGYGAR DPIIPLHLMK DRGIWSVVSI SLFFDFVFAV 360
  361 ESNFLYTVLM VAVNESQSSA TRIASLSSFV SVVTGFIFGL FVVYFRRLKG FVVFGCAMWM 420
  421 VAFGIMYHFR SQLHAHAGII GGMCLMGFGT GFFSYPINVS AQSCVSHEHM AVISSALYTT 480
  481 YRIGYAVGSS VAGAIWSQML YSRLVKYLGD STLATSVYTD PYTFIAQYVW GTPEREAAVK 540
  541 AYGEVQRVLM SVCIAFVAPM IVSALFMRDH KLTNEQSLED VEKQEEKDSL ANFFGNFKKK 600
  601 RVAV