YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9724, orf1...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHQLQFLPK DSVEIDYEAL PDDASLAAHL TAGALAGIME HTVMFPIDSI KTRMQMNLSN  60
   61 SEISRGLLKS LSKISSTEGF YALWKGVSSV VLGAGPAHAI YFSVFESTKT FLVNRLTNSP 120
  121 HSNRIVTDEN HPLIASCAGI TGTTASDALM TPFDMLKQRM QANAAYQDGK STSVRLFKLA 180
  181 SDIYKAEGLS AFYISYPTTL LTNIPFAALN FGFYEYSSSL LNPSHVYNPY LHCVSGGIAG 240
  241 GIAAALTTPF DCIKTVLQTK GISQNQNFRH VTGFKSAAVA LLKQEGAKAF WKGLKPRVIF 300
  301 NIPSTAISWT AYEMCKEVLI RGKGL

Type	Start	End	Confidence
Cytoplasmic	1	80	0.64
Transmembrane Helix	81	102	0.63
Non-Cytoplasmic	103	131	0.71
Transmembrane Helix	132	150	0.36
Cytoplasmic	151	191	0.58
Transmembrane Helix	192	209	0.56
Non-Cytoplasmic	210	229	0.78
Transmembrane Helix	230	250	0.55
Cytoplasmic	251	325	0.59