YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.9721, orf1...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEKSKQIV IIGGSYAGIL ALKTLLKSSP IELNITLISP NDSGYFNAAA PRLLIEPESI  60
   61 DKTIFPIKPT IEKLTSGTIH TAKFLQGVVT KVDLTNQKVF VDNESEIDYD NLIIASGARA 120
  121 KSPAFKLTNN NDQNYTIKAI LELGDEIKAA NNIAVIGGGS TGVETSAEIA FKYSDKNVVL 180
  181 YTGASRPLPS FPKSTSSKAT GKLNQLGIEI VNGERVNVKD KTIEFADGST KSFDLIIETS 240
  241 GLLPNTDFLP KKVLNEYGYV DTDEYLRLKD HHNVICLGDV VASGANSIVD LVYTQKPVFE 300
  301 KTVEFEVVDN EATQLKAYQK ASGITTFIPI GRNGGVGLLF GYCVPSFLIW FAKARDFMIS 360
  361 KAGEHFT

Type	Start	End	Confidence
Non-Cytoplasmic	1	333	0.90
Transmembrane Helix	334	352	0.76
Cytoplasmic	353	367	0.71