YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.96
Transmembrane Helix	17	39	0.91
Cytoplasmic	40	92	0.98
Transmembrane Helix	93	117	0.86
Non-Cytoplasmic	118	150	0.96
Transmembrane Helix	151	169	0.95
Cytoplasmic	170	386	0.99
Transmembrane Helix	387	411	0.87
Non-Cytoplasmic	412	432	0.93
Transmembrane Helix	433	457	0.88
Cytoplasmic	458	478	0.91
Transmembrane Helix	479	502	0.88
Non-Cytoplasmic	503	534	0.89
Transmembrane Helix	535	556	0.90
Cytoplasmic	557	576	0.82
Transmembrane Helix	577	598	0.83
Non-Cytoplasmic	599	601	0.59
Transmembrane Helix	602	625	0.84
Cytoplasmic	626	639	0.82
Transmembrane Helix	640	658	0.93
Non-Cytoplasmic	659	664	0.70
Transmembrane Helix	665	685	0.89
Cytoplasmic	686	927	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSSIPQSS NSSVSQFLST LIPTLVVSVV FLLAFIVIHS KQRRVYEPRA VVESLPDDLR  60
   61 TETAPKGPFS WLTYLLAKPR TFYIQYAGTD GYFFLRFLFE FFCVCVLGAV ITWPILFPVN 120
  121 ATNGNNNTPG SNVKGFDILT FANIKDKWRT FAHVFLSWIL FGAVIFLIYR ELVYYVTYRH 180
  181 ALQTTPLYDS LLSSRTLLLT EISTEYLQDD KLRGYFPTAT NIWYSRDYKK LQKQVKERTK 240
  241 LANKYEGTLN KVLTKAVKLR NKCLKKSKPA PEPQDDIDKY LKDGKKRPTH KLKFLIGIKV 300
  301 DTLDYSPEKL GELNKEITKE QTEYQTYDQL PAVFIEFPSQ LEMQKAYQAI PYQPDFKGVK 360
  361 TVINAAPEDI IWENLQLTSM KRRIKSIIAN TILTLLIIFW CIPVAVVGAI SNINVLTDKV 420
  421 PFLKFILKMP DVIMGVITGL LPVVALAILM SLVPPFIKWM GKISGRLTIQ QVESYCQSWY 480
  481 FAFQVVNVFL AIALGSSAAA VATQIVQNPG EALQKLSSSF PKSVNFYYSY LCLEGLTISS 540
  541 GVLLQIVALI LSHILGRILD GTPRAKWTRW NTLGQPAYST LYPGFQLLTV IALSYSVIAP 600
  601 LILGFTAIAF ILFYFAYIYT MIFVLRPSTV DARGTNYVKS LFQLFTGLFL AQLWITAIFV 660
  661 FSKNWACVAL EGVIVVVTIA ARLWMKWKFL PLVDAVPISA IKYAAGDPTY SYPIHDQGLK 720
  721 EIKVEGKNYW EGGNQLGLGP DPKDQVLPDR IPGNGPSSYA YDQQQQQYHR GSDSSAVDTK 780
  781 VGHGESVDKP KSPFTDSNNN HDAEKSAGFN PVNKAIAAPT QGVSWLTSFF QPKKDTFDII 840
  841 KSDMPSSYFN YIEYHSDFIR HAYDDPAVTA EEPHIWIARD PMGLSEIEKN KALKEGVQVS 900
  901 DENATFDDKG ALIFTGPPPA YEEPIRV