YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.417, orf19...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEENISFSQ RMISACSGSL VTSLVVTPFD VIRIRIQQQS ILPQEQPCCQ LHFPEHNFPK  60
   61 QKVPVEMAPE LFWIHDKYCQ SAESCTRIYS TFQGFSTVAK HEGVGTLWRG LSLTLLMAVP 120
  121 SNIIYFTGYE YIRDHSPISN HRLNPLFCGS WERTLSATFV APAELIKTRL QSIPTDSKSA 180
  181 SHILSNLLRD SSAAVKKDGV RTMFKGLGIT LWRDVPFSGI YWSSYEYFKA FFARTLKTDF 240
  241 NNPTRGGIDD WKVFATSFLS GSISGTIAAF FTNPFDVGKT RIQITMQENE KISHPNMFKY 300
  301 LYKIYKNEGM GALYAGFGPR VMKIAPACAI MISSYEVGKK FFKNGNNSN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.67
Transmembrane Helix	12	32	0.62
Non-Cytoplasmic	33	349	0.83