YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2849, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAESSSIDN TPNDVEAQRP VYEPKYDDSV NVSPLKNHMI AFLGEFFGTF IFLWVAFVIA  60
   61 QIANQDPTIP DKGSDPMQLI MISFGFGFGV MMGVFMFFRV SGGNLNPAVT LTLVLAQAVP 120
  121 PIRGLFMMVA QMIAGMAAAG AASAMTPGPI AFTNGLGGGA SKARGVFLEA FGTCILCLTV 180
  181 LMMAVEKSRA TFMAPFVIGI SLFLGHLICV YYTGAGLNPA RSFGPCVAAR SFPVYHWIYW 240
  241 VGPILGSVIA FAIWKIFKIL KYETCNPGQD SDA

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	63	0.89
Non-Cytoplasmic	64	78	0.87
Transmembrane Helix	79	101	0.90
Cytoplasmic	102	123	0.79
Transmembrane Helix	124	145	0.86
Non-Cytoplasmic	146	164	0.80
Transmembrane Helix	165	185	0.93
Cytoplasmic	186	191	0.90
Transmembrane Helix	192	215	0.90
Non-Cytoplasmic	216	235	0.92
Transmembrane Helix	236	257	0.90
Cytoplasmic	258	273	0.96