YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2837, orf1...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYYILAFFI FISLSIYATV IFFSHKPRKP FPSELTYKTN DSTDKSHPLP PRINTNSKFQ  60
   61 DDGIDISLVI PCYNETQRLG KMLDEAIEYL EKNHQSKYEI IVVDDGSSDG TDEYALQKAN 120
  121 EFKLPSHIMR VVQLKQNRGK GGAVTHGLLH SRGKYALFAD ADGATSFPDV AKLVNYLANA 180
  181 NGQPSIAIGS RAHMVNTDAV VKRSFIRNFL MYGLHALVFV FGIRDVRDTQ CGFKMFNFEA 240
  241 VKNIFPHMHT ERWIFDVEVL LLGEIQKFNM KELPVNWQEI DGSKVDLARD SIAMAIDLVV 300
  301 TRLAYLLGVY KLDECGRINK KEQ

Type	Start	End	Confidence
Cytoplasmic	1	4	0.43
Transmembrane Helix	5	25	0.83
Non-Cytoplasmic	26	323	0.63