YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1930
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	158	0.99
Transmembrane Helix	159	181	0.89
Cytoplasmic	182	231	0.91
Transmembrane Helix	232	250	0.65
Non-Cytoplasmic	251	276	0.70
Transmembrane Helix	277	297	0.72
Cytoplasmic	298	317	0.89
Transmembrane Helix	318	338	0.93
Non-Cytoplasmic	339	345	0.86
Transmembrane Helix	346	367	0.95
Cytoplasmic	368	374	0.84
Transmembrane Helix	375	394	0.94
Non-Cytoplasmic	395	400	0.76
Transmembrane Helix	401	419	0.59
Cytoplasmic	420	710	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFIIAYLIV GFLFATTTNA AKPRKYKRYG QLKSFYACNY QIGQSVSFCR SPRNTTCLCS  60
   61 SENALATYAG CFAYDKRNKT EVIDYLVEYC EERGSVTIDK DWYEKSYQNF LEKAKTAQEI 120
  121 PNFNKTIPIN VPFKLDEAQM QLYQEGYNHF MGNYDDSLYY GVGALGYWLL IMLFGAIFHW 180
  181 SKFLFPGLTK KLTFKPINLW REYVSMPATF KKKKAEEFRF LKIFDSLIPT RFESIVIFFY 240
  241 YVYTIVTHAI NMEALDSDPV FYSKYKAQIR YCADRTGITA TIVMPLVFLY AGRNNFLQWL 300
  301 TGWQYQTFVA YHRHTARVMF YLVVIHAVLF TVALADYYST DVKETYLIWG IIATIAGGII 360
  361 LVQAMLFFRR RWYEIFLFIH IVLAALWVAG AWIHVEELGY IWFVYPTVAV WCFDRAVRIG 420
  421 RLIVFGFPKA QVTLMANETL KVVIPKPRHW KSVPGGHAFI HFIRPTCFWQ NHPFTFVESP 480
  481 DGKSILVYCK VKGGITHSLY RYLSNNPGQT ASIRVGVEGP YGEPTPARYA DTAVFVAGGN 540
  541 GIPGIYSEVT DMASRMPKET KTVIKLYWII REYKSLEWFR DEFMELANTN IETTVYVTKP 600
  601 ELCCSSTDDG SDDAGSKKEY VAHEIKAEGD ESSQGPESIR SRLSHVTFKE GRPCIKDMVE 660
  661 TNLHESNGSV AFVSCGHPAM VDELRYFCSK NVDNSEKKRV DFYEQVQVWT