YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10416, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.64
Transmembrane Helix	38	57	0.69
Non-Cytoplasmic	58	72	0.34
Transmembrane Helix	73	87	0.67
Cytoplasmic	88	88	0.16
Transmembrane Helix	89	104	0.77
Non-Cytoplasmic	105	118	0.58
Transmembrane Helix	119	143	0.79
Cytoplasmic	144	147	0.50
Transmembrane Helix	148	166	0.69
Non-Cytoplasmic	167	185	0.80
Transmembrane Helix	186	209	0.86
Cytoplasmic	210	218	0.87
Transmembrane Helix	219	239	0.94
Non-Cytoplasmic	240	278	0.97
Transmembrane Helix	279	300	0.94
Cytoplasmic	301	320	0.94
Transmembrane Helix	321	343	0.91
Non-Cytoplasmic	344	392	0.96
Transmembrane Helix	393	416	0.89
Cytoplasmic	417	455	0.95
Transmembrane Helix	456	475	0.94
Non-Cytoplasmic	476	479	0.84
Transmembrane Helix	480	499	0.91
Cytoplasmic	500	561	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLSFRHFNY FGYGIYNDIK SRLPHYKSDF TDAFNYRVIP STAFIFFTNL LPAIAFAQDM  60
   61 FDKTDHAYGV NEVLMSSALA GVVFGLFSGQ PLCIVGVTGP ISIFSYTVYE LIHPRGTPYF 120
  121 PFMCWVYLWS MVFHIIIAVG NYISFLRIIS LYSCDIFGFF INMVYIQKGI QILSNQFDDV 180
  181 DLASGYCSVM IALLMVICGV GSNILGNYLH YFKPWVRKVF VDYGVVVSVI FFTGFIHFGG 240
  241 KLDDTDLARL PITQSFQPTR NGEIRPHGWF IHFWPGENIS VGDVFLAIPF AILLTFLFYF 300
  301 DHNVSSLMCQ SKEYPLTKPA SFHWDFLLLG LTTGLAGILG IPAPNGLIPQ APLHTDSLVI 360
  361 HDKTGKRLSV VEQRVTNTAQ GALTFLMMSR PFLVVLGLVP QAVLSGLFFI MAIGGLHGNI 420
  421 VTNRIRYCFL DKEYIETDPQ CPQVWKDIHR LPTKKWFYIY TLLEIIGGVA EFAITLTKGA 480
  481 VGFPGVLLFL AFCAKWVWPL IIPKDELAKL DGDVADEFIL KNFTVASDEK KRRRRRSDAE 540
  541 EKERGSNYHE STNEQSESVT S