YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68481192, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.85
Non-Cytoplasmic	36	47	0.83
Transmembrane Helix	48	70	0.88
Cytoplasmic	71	88	0.91
Transmembrane Helix	89	113	0.75
Non-Cytoplasmic	114	140	0.72
Transmembrane Helix	141	161	0.93
Cytoplasmic	162	175	0.74
Transmembrane Helix	176	195	0.79
Non-Cytoplasmic	196	201	0.62
Transmembrane Helix	202	219	0.93
Cytoplasmic	220	228	0.79
Transmembrane Helix	229	247	0.62
Non-Cytoplasmic	248	304	0.65
Transmembrane Helix	305	325	0.92
Cytoplasmic	326	335	0.61
Transmembrane Helix	336	356	0.89
Non-Cytoplasmic	357	374	0.64
Transmembrane Helix	375	398	0.86
Cytoplasmic	399	411	0.60
Transmembrane Helix	412	433	0.91
Non-Cytoplasmic	434	481	0.68
Transmembrane Helix	482	503	0.89
Cytoplasmic	504	512	0.50
Transmembrane Helix	513	531	0.93
Non-Cytoplasmic	532	626	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFKSRYESS LTLTKFFGSL PLLVAFPLVF LSHSLSTTSF EFAYENTILL NIFLASACLS  60
   61 IVILAHRLNV LPISNATATT SGSNKMSTMY LLSTFYVIYT SASFLPANRV AVLYLGLFLN 120
  121 SWNLYTPLAF VLDCYTNFKE FYGLHIVFTY ALVILGYYLL SSKLNSSSLS NLLSSLDKPT 180
  181 VFGTFIFSAL ALVFYNPSMF NFSMIGVNLA TFIVFMISVQ EFQMRDSRLS SVFVSLLLEL 240
  241 LQYVVLLQQP SFSQIINIGL AAVVTPDKSY HFEQDEEKGT DQGHKITNNS APILKELMGH 300
  301 SDTRAIFNFL LLNATFMFVQ FLYSFRSKSL GLLSDSLHMA LDCMSLVLGL IAGVISKHEI 360
  361 DSNGKYPFGL KNFEILAGFT NGTLLVGISG SILFEAIGRL FNPVHLQKTT ELIIVSILGL 420
  421 LVNLVGIFAF NHGHSHGHSH GHSHGSSHSH EHSHGHSHEH SHAPNCDSED EHDHMNDNMK 480
  481 GIFLHIMADA LGSVGVVIST ILTKYFSWDG FDPIASIIIA TLIFVSAVPL IKSTASTLLL 540
  541 SISKTKEDQI RNILHEVQQV KGVRSLTTPR FWPGPRNNVC GYVHIQVYRG ENTSYIKRQC 600
  601 EKMFESRNMD VMLQIENDYD DCWCRK