YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.10634, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.95
Non-Cytoplasmic	41	50	0.80
Transmembrane Helix	51	71	0.93
Cytoplasmic	72	90	0.90
Transmembrane Helix	91	114	0.91
Non-Cytoplasmic	115	121	0.82
Transmembrane Helix	122	140	0.95
Cytoplasmic	141	148	0.76
Transmembrane Helix	149	171	0.87
Non-Cytoplasmic	172	190	0.91
Transmembrane Helix	191	215	0.86
Cytoplasmic	216	225	0.81
Transmembrane Helix	226	244	0.97
Non-Cytoplasmic	245	254	0.86
Transmembrane Helix	255	278	0.90
Cytoplasmic	279	327	0.93
Transmembrane Helix	328	344	0.48
Non-Cytoplasmic	345	350	0.41
Transmembrane Helix	351	372	0.78
Cytoplasmic	373	393	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFKQDARAA FRGLSITDKL LPLLIVLAIV IGVIISVYVP GSSEAFNGTK VVGVSVPLAI  60
   61 GLIIMMIPPL CKVEWEHFHK FFNKSTYLRP ILISLVLNWI ICPFIMLGLA WVVLFNYDEY 120
  121 RTGIIMIGIA RCIAMVLLWN DIALGDNTLC AVIVLINSLL QVVLYAPYQL FFCYVISGDP 180
  181 IPIDSGVSYS IVAKSVAFFL GVPLGLGVVV RFALLYFKVY DKLIRFISPW ALIGLLYTII 240
  241 VIFIDKGKEF IEEVGTAFLC FIPLTLYFLI AWFTTFFVLR WSSKAPKLED EDTRLLCGCE 300
  301 EKIEKYPTKW RRGCSANYSE ITTQSFTAAS NNFELSLAVA ISIYGSGSKQ AIAATFGPLL 360
  361 EVPILLILTF VARYFRTKFI WSDVEEQENE ICR