YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3104, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPFAWPYPP EQKDGYWGIP TSTIDWCEEN YVISTYIAEA LNTTTNSVFI ALATFAIYHA  60
   61 FHNKLEPRFI FTAFGFLLVG VGSWLFHMTL RYHFQLLDEL PMIYATCIPF WSVFSEFKTP 120
  121 RQSILVAVGI FTAANLLTVI YLYFRNPTIH QAAYGILNGF IILRSIQLNV KYVHDKTARA 180
  181 QLHKTSIFGV GIFLLGYFLW NLDIHFCDFA RATRREWGIP YGFVLEGHGW WHIFTGIGVY 240
  241 YSLVYEEYLR CFLTGTEKYF QFTWIWGLPV VYCIDKQGLE RYRSVQKLAE EDKKHI

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.52
Transmembrane Helix	40	61	0.64
Cytoplasmic	62	68	0.72
Transmembrane Helix	69	88	0.95
Non-Cytoplasmic	89	95	0.63
Transmembrane Helix	96	114	0.74
Cytoplasmic	115	123	0.78
Transmembrane Helix	124	144	0.94
Non-Cytoplasmic	145	149	0.81
Transmembrane Helix	150	168	0.86
Cytoplasmic	169	181	0.80
Transmembrane Helix	182	200	0.91
Non-Cytoplasmic	201	227	0.83
Transmembrane Helix	228	245	0.86
Cytoplasmic	246	296	0.86