YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3083, orf1...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLRRRRIP KPIPRIFEDD EYKQYTRPHN WRLLSLVGIC WVLLIHYFER TCPQNTLSAC  60
   61 QWKNWEQWNS PDSAHRIVLI ADPQIVDDYS YPKQFKIINY FTKKLADNYL HRNYEMIHSV 120
  121 LAPDTTIFLG DLFDGGRYWD DKQWIDEYKR FTKIFPKKIN RRDIRSVPGN HDIGFQTIRH 180
  181 KVVKRFAEYY GELNDYIELG NHTLVLLDSI SLSHPDKLIR KEPDNFLDQL NNRISSTFPR 240
  241 ILLTHVPLFR NPVTQTCGSH REKRKPFPLQ RGDQYQTVIE YEISRRILNT IKPTLIFAGD 300
  301 DHDYCDITQE YDGGAAREIT VKSAAMTGGI KHPAVQLLSL NTNEPTRTYE TEMCYMPNAY 360
  361 HGLYAYITFL LLTSFFIDRS IVFLNLVWPL FILNVYYMTI

Type	Start	End	Confidence
Cytoplasmic	1	30	0.73
Transmembrane Helix	31	48	0.63
Non-Cytoplasmic	49	379	0.83
Transmembrane Helix	380	398	0.58
Cytoplasmic	399	400	0.50