YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13249, orf...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQELLLKGR KKDSIEQFIS GSQLFLENGL SQLRYMVLVE GLSTPEGYDQ CPYRSYVWSI  60
   61 LCRVPPSPTE QYLQLLETSS QTLPDELLIK IKNDTFRTLM NDKKFHSKVN EESLIRILSC 120
  121 IGITTEVGYV QGLNVLLAPI AYVCHKSEPQ AFAILHNLIT KQIPLYITPN MEGVHTGLQL 180
  181 VDAVLKIIDP VLSDYLDSKF LKAKIYAFPS ILTLCACTPP LKSVLKLWDF LFAYGTHINV 240
  241 LFVVAQLIIC RSSILESEQP MKILRTWPNL EENEIIKLSL SFIPELPEKL YDLIARHGYD 300
  301 RKVPKELARF LEEK

Type	Start	End	Confidence
Cytoplasmic	1	204	0.59
Transmembrane Helix	205	222	0.44
Non-Cytoplasmic	223	232	0.67
Transmembrane Helix	233	255	0.64
Cytoplasmic	256	314	0.58