YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.13240, orf...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFKPPANF SRVLSQPTFY EKIIITEQPS LIKGIPDGIL ALIVPVVAYW SYSMFFHIID  60
   61 VYELAEQYRI HPSEEEKSRN KVTLHEVVRD VIFQHIIQTI AGFAVYCIDP IPKTGYELYT 120
  121 MWNLKYNYLP SFVPDWAIYY GYMYGWSFLR ILIAFCIIDS WQFWLHRLMH INKSLYRRFH 180
  181 SRHHRLYVPY AFGALYNDPV EGFLLDTLGT GIASLVTGLS HRESIFLYTF ATLKTVDDHC 240
  241 GYRLPFDIFQ IIFPNNSVYH DIHHQMWGIK NNFSQPFFTF WDVLNNTQYK FVNEYKDLQK 300
  301 HITLTKYKEF LAKKSGSKSK SKQELEIEEE EKSIDKETKK EI

Type	Start	End	Confidence
Cytoplasmic	1	37	0.82
Transmembrane Helix	38	53	0.81
Non-Cytoplasmic	54	141	0.80
Transmembrane Helix	142	165	0.83
Cytoplasmic	166	342	0.79