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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SHE9_CANAL
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFVALSKK KKYQHKLFAP YLRPSTDTTT TETRFMLSTC LIRNCVFIRP RLSVICFKAI  60
   61 RYQSKKSDFP DYTKINDPKL REIIEGSNFG TEAILKKQRE DQDKKKKMEQ ERKRLEQERE 120
  121 VDRRREEKRA KEESESNKTD NDNEANQHTD DKLAKVNEKL ESNFSKTESG KLRGEDTGTR 180
  181 ETVVETEEEE ELKLKAENKI IATSKDSVDE SDIPNLAKEI NETIQKEIAG LPSQKAKNQS 240
  241 KLAKNLTKYL DSAHDTILTA TRALNDVTGY SAIEKLKKSI ETQEDDLKKA KEKVKQCKIA 300
  301 YGEAIQRRSH SQREVNELLT RKHNWSSNDL ERFTELYRND HENEIHEQEA EKKLDEAESK 360
  361 VDGVQLKLTQ SILTRYHEEQ IWSDKIRRSS TWGTWVLMGL NVLLFVVATF IVEPWKRSKL 420
  421 VSAFEDKVKQ VLVGISQENE QILDPIIEKL EPTDGQVPIK TSFDFKFVTN TWHGLKAALV 480
  481 RNYEALMSPE ITNLEFDKFE FELFTMTVAI VAFSMGSLIV SLFK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle