YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMP3_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKINFNWRT FYLLTIVFRF VFTLSDSYIH PDEHFQSLEV LTNRILNYST NIPWEFQDDP  60
   61 ARSLAPLYFI YGPLLYFIKF FKLNLTALQI WYIARLQISI LSWIITDFCL YWMLPSKPER 120
  121 IKAIFFTSTS YITLVYQNHL FSNSIETLLL LVTILLIDDL RYVQESKDQD VQNLNKNKNL 180
  181 FYTGVLISLG IFNRITFPAF LILPGWFVMK YVLKHYVSGL YLVMGFFSTT ALLILVDTIL 240
  241 FGNINNVVAE PFNISSYIIA PLNNLLYNAR YENLAQHGIH PYYTHILVNM PQILGPGLIF 300
  301 FVSKSYTKTT PFLTVISGLL FLSVIPHQEL RFLIPLLPLA CCSFDFTLKW VQPWMLYTWY 360
  361 IFNIFMSILM GKLHQGGVVP VLDHIKSEAS VQVWWRTYTP PSWILGSNST ETTHLGEKLN 420
  421 DNKFINIVDC MGADSKEVQQ ILQTISTNKP VYLITPIASF KHFDESRFSP VWNYTFHLDL 480
  481 DHLDFADIQP GLGVYQLL

Type	Start	End	Confidence
Cytoplasmic	1	9	0.86
Transmembrane Helix	10	29	0.82
Non-Cytoplasmic	30	63	0.86
Transmembrane Helix	64	81	0.57
Cytoplasmic	82	90	0.41
Transmembrane Helix	91	114	0.81
Non-Cytoplasmic	115	184	0.57
Transmembrane Helix	185	208	0.79
Cytoplasmic	209	216	0.60
Transmembrane Helix	217	241	0.85
Non-Cytoplasmic	242	281	0.72
Transmembrane Helix	282	302	0.79
Cytoplasmic	303	308	0.75
Transmembrane Helix	309	328	0.83
Non-Cytoplasmic	329	355	0.69
Transmembrane Helix	356	376	0.76
Cytoplasmic	377	498	0.82