YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573822
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSYTKEQE SIVLKVLSYK PHQFYEILSV EKSASEGEIK KSYRKLAIKC HPDKNPHPRS  60
   61 SEAFKILNKA WEVLSDPQKK RIFDQTGSDP TSRINNASAA SGGFPSSSFS GRSGFANNPF 120
  121 EDDLFNMFFG GGGGPRGSPF ASGPTFTFGG NGFTFQSYGN GGADPFMRYR RTTRRPRAQS 180
  181 PNGREQTGPN GEEQPSLFEA LKGILPILML LIVPILSAIF SGDTSPEYSF VPSQEYNIQR 240
  241 NTPKYNIPFY VTDKFQEKHG SKSKRQLRNY DSKVENLFIS DKRAKCSKEQ IHKDQLIEDA 300
  301 YGWFSVDSEK LQRAENFPTP NCDILKGLNL L

Type	Start	End	Confidence
Cytoplasmic	1	202	0.55
Transmembrane Helix	203	222	0.67
Non-Cytoplasmic	223	331	0.83