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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.7242
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFFSSSLIL QAMRAICLLL LTINLAIASV SSSHKPGYCN TYGNCGKKSV FGKPLPCAEF  60
   61 VPAVKASQES REKLKSICGK DFDYICCSPE QIDILESNLK RVDPLISSCP ACRKNFYDFF 120
  121 CQFSCSPNES QFVEIIKTET ARDTGKEIVT EINQYVEPGM ANQFFDSCKN VKFSATNGYA 180
  181 MDLIGGGAKN YSQFLKFLGD EKPLLGGSPY QINFVYKLPE TDSGLVLRNE PLRDCNDKEY 240
  241 KCACTDCEES CPKLPHAKDL TKKCTVGVLP CFSFSIIIIW SCMIVLLGGY HVYLAKLKKE 300
  301 RRRSIAEDSE DDESTMINPL FYAGLGKKRA KQFSSEIGSK IQDWFANIGY FCSKFPGISI 360
  361 GTSLAVVVLL SLGLFKLQLE TDPVKLWVSP NDPAYKNQQY FESNFGEWFR IEQVIVSSKD 420
  421 DGPVLNWDIV KWWFDKESQL ETLNENVRLS DICFKPLDET CALQSFTQYF QGDISGLTET 480
  481 NWKSKLQSCV DSPVNCLPTF QQPLKPNILF DSNDISQAKA FTVTVLVNSD TQNENYTSNT 540
  541 ISYEHSFQKW AADLQTEYPN LNIAYSTEIS LKEELNQSSN TDIKTIAISY LVMFIYASLA 600
  601 LGGKLPSANL YSLVKTRFTL GFSSIIIILL SVTASVGFFS IIGLRSTLII AEVIPFLVLA 660
  661 IGIDNIFLIV HELHVISEGN PNLALEVRIS QALKHIGPSC FISAVLQVCM FLLATSVGMP 720
  721 AVKNFAYYGA GAVLINFSLQ MTCFIGLLAL DQRRLEDNRV DYVPWVTISP IQLQDNDEID 780
  781 EPVHLEYNFS RWIGDHYAPF LLKKTTKPKV ITLFVLWVGI SLSLFPKIQL GLDQRIAIPS 840
  841 KSYLVNYFNS VYDYLNVGPP VFFVVKDLDY SERSNQQKIC GGFSACDEFS LANILEQEFK 900
  901 RSDISMLSEP ASNWLDDFFS WLNPDLDQCC RFKKSTVFEK TPEFCSPNAP QRQCQSCYLN 960
  961 HNPPYDSSMK AFPERDFMFY FNDWIQEPSD PCPLGGKAAH GQAISRTTEK IDSSYFRTSF1020
 1021 APLRGQDEFI NAYKSGNNIV KEITKLIPSM DVFAYSPFFI FFTQYQNIVL LTVALLTVAM1080
 1081 LIIYVISTFL LSSFRAASIL TITITAIMIN IGGVLALWSI SLNAVTLVNL VICVGFAVEF1140
 1141 TIHLTRAYCV PKVKMFDNPA EEELYNNLVN AEPENTRRSS ITSLNAEFRN TKAHNALCSV1200
 1201 GGSLISGVTL TKLIGISVLA FTRSQIFEVY YFRMWLSLVV ISFVHAFVLL PVLLSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle