YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7231
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDLFNVQVF FVVFREALEA VIVVSVLLAF VKQSMGSSAN GPELKKKLYR QIWLGAGLGV  60
   61 LICIIIGGAF IGTFYGLGKD IWGKSEDLWE GIFCIIATVL ITAMGIPMLR INKMKEKWRV 120
  121 KLAQALIKSP ENKKNRFKLG YLGKKYALFI LPFITCLREG LEAVVFVGGV GITSPASSFP 180
  181 IPVIVGIICG LAVGALLYYF GSNMSMQIFL IISTCILYLI AAGLFSRGVW FFESYQYNKK 240
  241 TGGDAAENGS GPGTYDISKS VWHVNCCNPL TDNGWDIFNA ILGWQNSATY GSVISYNVYW 300
  301 IFIISVLLLM VYEEKHGHLP LTKNLTLVQL NPMYHIKGKK KLELNKAEKE ELFTKLQKQK 360
  361 FGDVQEIDET SSNKLVETQE NK

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.81
Transmembrane Helix	12	31	0.84
Cytoplasmic	32	51	0.91
Transmembrane Helix	52	74	0.94
Non-Cytoplasmic	75	88	0.90
Transmembrane Helix	89	111	0.91
Cytoplasmic	112	145	0.96
Transmembrane Helix	146	170	0.80
Non-Cytoplasmic	171	178	0.79
Transmembrane Helix	179	200	0.94
Cytoplasmic	201	207	0.83
Transmembrane Helix	208	228	0.92
Non-Cytoplasmic	229	291	0.93
Transmembrane Helix	292	312	0.89
Cytoplasmic	313	382	0.97