YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7228
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRGNYPYL SADMFPQNPN ITTSSRITST TSRTGSVISN QSSSIYIPRP TINYGYSSSS  60
   61 TLVSRLKNIK VMVKRLFKPK TLDFETAIWE IFHLIVNPKK MYRSHYYYKQ QQHEQLGNGN 120
  121 SYTRDDPSFL ILLTGFLSLS AIAWGLAYQP SFKEIIKLIV YMVLVDFYLT GIVISTVTWI 180
  181 LVNRLFNPGV QFSSYNINYI SWGFCFDIHC NSFLIIWCLL YVVQFILLPV IRIKHSIFAL 240
  241 LVGNSLYFGS IGYYFVVSFY GYNSLPFISA NFGNYSSFSS SANNNNKNNP ARTLQLVVVA 300
  301 GILPILALGW LVTLLFRINV ADSMVDIYFN

Type	Start	End	Confidence
Non-Cytoplasmic	1	128	0.85
Transmembrane Helix	129	148	0.94
Cytoplasmic	149	157	0.88
Transmembrane Helix	158	182	0.89
Non-Cytoplasmic	183	204	0.86
Transmembrane Helix	205	228	0.83
Cytoplasmic	229	236	0.79
Transmembrane Helix	237	257	0.90
Non-Cytoplasmic	258	293	0.79
Transmembrane Helix	294	316	0.88
Cytoplasmic	317	330	0.76