YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3579, orf1...
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMINRIALR SARPAMGMAF RPAPIGLRYL SAPADPKQKA NSIIDALPGN NLLSKTGVLA  60
   61 TSAAAAIYGI SNGLFIIHDE TILLVTFASF TALVAKFVAP LYTEWADGEI KKVNDILNQS 120
  121 RTNHIEAVNK RIETVSELKN VVATTEDLFA LSKETAQFEA DSFELKQKLA VSHEAKSVLD 180
  181 SWVRFEQQQR QLEQEQLAKE VIDKVDKEIA NPKFQDKVLA ESLNEIEKLF AKN

Type	Start	End	Confidence
Cytoplasmic	1	51	0.56
Transmembrane Helix	52	70	0.55
Non-Cytoplasmic	71	81	0.59
Transmembrane Helix	82	102	0.52
Cytoplasmic	103	233	0.55