YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GNT1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.48
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKSSSWKA LLKNWEFKVA AFIGIYFLIS HVVLETTDVV NEKGLKSHLK VLPEEVIDYY  60
   61 GKQPFSNVDK YAYMQYATNY DYLNLAIINF IHLRKANTKI PNLVIIYDEV LHYYASDKWS 120
  121 ELYQVANQYK ITLKAAPLIK ASYQDDSNWA ASFTKFHIFN QVEYDRIVFF DSDSMLVDIP 180
  181 NEIDFDNMES RFNHIDELFK IPQELSFASP QAYWLNNVVE GKSPRPRKNV EIPNKKRYSL 240
  241 RMKKLVNDLS IYQDFNLLPS LIYENHYFDN ANHFFANHIM VITPSKNTFQ ELMRYIHNPW 300
  301 WWSITNRGSL RKPNDYDMEI LNKYLNNELQ RKRINVGILP HRVYGVLTGE FGEEWHERFV 360
  361 VEPQYLPFIN KKSNKGWSPL EFFKKIKVVH FSDSPIPKPW EEENNEEHYN IKKIYCDKGD 420
  421 MEKFHKDYPV YKPRLTDDCD SVSIWNWFRE QFYKERSGYW FA

Type	Start	End	Confidence
Cytoplasmic	1	13	0.46
Transmembrane Helix	14	34	0.42
Non-Cytoplasmic	35	462	0.99