YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3526
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.98
Transmembrane Helix	65	86	0.88
Non-Cytoplasmic	87	109	0.94
Transmembrane Helix	110	132	0.90
Cytoplasmic	133	138	0.82
Transmembrane Helix	139	157	0.94
Non-Cytoplasmic	158	166	0.62
Transmembrane Helix	167	185	0.95
Cytoplasmic	186	195	0.81
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	223	0.83
Transmembrane Helix	224	246	0.91
Cytoplasmic	247	311	0.97
Transmembrane Helix	312	332	0.84
Non-Cytoplasmic	333	351	0.80
Transmembrane Helix	352	374	0.91
Cytoplasmic	375	381	0.94
Transmembrane Helix	382	404	0.94
Non-Cytoplasmic	405	420	0.91
Transmembrane Helix	421	446	0.84
Cytoplasmic	447	458	0.89
Transmembrane Helix	459	481	0.90
Non-Cytoplasmic	482	489	0.77
Transmembrane Helix	490	510	0.94
Cytoplasmic	511	554	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSTNNTQS KATPSVLENE VNSSKSSVVS STSSAKGLLR ETTNHGTMET SSVQISESES  60
   61 RPSKMVLVLT LASSISGFMF GYDTGYISSA LVQIGTDLSN KILTSGEKEF ITSATSLGAL 120
  121 LGAVVGGVLA NLIGRRRVLL GSNIIFVVGT IIQLAARTVW TMIAGRFVLG WGVGIASLIA 180
  181 PLMISELAPA KYRGRLIVTN VIFITGGQLI AYFINWGLTR VSHGWRVSVG LCMVPPVLQF 240
  241 VLFWFLPDTP RFYVMNGNFE KARQVLRKVH VDPSDEFVNA TIDEMIASDS TVPGNGPLQK 300
  301 AWKSIKIIHT TPGNFRALIL ACGLQGIQQF TGFNSLMYFS ATIFETIGFH NATAVSIIIA 360
  361 ATNFVFTGIA ICIIDKVGRR RILLVGMPCM CISLIVCAVA FHYLNVDFST GTVVSRGING 420
  421 WGIVVIIGMI LYVASYAIGI GNAAWVGVEL FSDVNVRSIG AMYAACTNWA GSLVIASTFL 480
  481 TMLENITPTG TFSFFAGLCF IAFFFVYFLL PDTAGLELEE TTDFLSNGFN VKQAAQLSKE 540
  541 RKKHSKFAKS KPTV