YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.2262, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLINQFSKS PPLLQFNSPN FKFIFKYSLL LFFLIIVIFL FLYPPSIYQI MSILPETQKV  60
   61 VLHRENGDYD VIEYSDFPTP KIESSHDIIV KNSYAGVNFI EAYFRKGIYK ASLPYVFGRE 120
  121 ASGEVVAVGD EVSTLKVGDK IAYLSPNTFA QYTKITDDNY KYIKLPDNAS DEELKIYGSL 180
  181 FLQGLTALTF VNEAYKVQKD DYILVWAAAG GVGKILVQLI SQLGAHVIAV ASTPEKLKIA 240
  241 QDLGAEFLIN STSDDIVEKV KEITNGEGVA ASFDSVGKDT FEISLNSIKR KGTFVSYGNA 300
  301 SGPVTPFPLS ILSPKNIKIA RPQLYAYIGN ADEWDHYSTE LLKLFESGKL KFDIFKTYDL 360
  361 KDYVQAAKDL EGRKTTGKLT LKIS

Type	Start	End	Confidence
Cytoplasmic	1	22	0.93
Transmembrane Helix	23	44	0.90
Non-Cytoplasmic	45	384	0.94