YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3184, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKFFKSFTN KYSPLSQNDN EDGAPLPPPV TQPGAAPSNQ SFKTKLQQLN PFRSQSVYLE  60
   61 DDENYVTSDP GMFELSRWDR MLIFALCFAG SVCCYLICIF LFPILSLKPR KFALIWSIGS 120
  121 ILFLVSFGVL QGFKAYMIHL FSSTRIIFTI VFGASIILTL ISSVSLKSTL LSIIFAVIQL 180
  181 LAALWYTVSY FPMGKQTLNL AGNVARSQVD TWISS

Type	Start	End	Confidence
Cytoplasmic	1	81	0.83
Transmembrane Helix	82	105	0.94
Non-Cytoplasmic	106	111	0.77
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	140	0.71
Transmembrane Helix	141	163	0.86
Non-Cytoplasmic	164	169	0.62
Transmembrane Helix	170	190	0.91
Cytoplasmic	191	215	0.80