YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6993
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.99
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	115	0.76
Transmembrane Helix	116	142	0.82
Cytoplasmic	143	161	0.73
Transmembrane Helix	162	185	0.79
Non-Cytoplasmic	186	193	0.83
Transmembrane Helix	194	213	0.95
Cytoplasmic	214	224	0.79
Transmembrane Helix	225	247	0.89
Non-Cytoplasmic	248	270	0.86
Transmembrane Helix	271	292	0.91
Cytoplasmic	293	308	0.96
Transmembrane Helix	309	330	0.93
Non-Cytoplasmic	331	362	0.91
Transmembrane Helix	363	383	0.82
Cytoplasmic	384	408	0.85
Transmembrane Helix	409	428	0.96
Non-Cytoplasmic	429	436	0.84
Transmembrane Helix	437	458	0.94
Cytoplasmic	459	478	0.86
Transmembrane Helix	479	503	0.86
Non-Cytoplasmic	504	514	0.79
Transmembrane Helix	515	533	0.93
Cytoplasmic	534	588	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPEKELDYIR STDAAGSTEK DGGIYIDAFD KQDNAPPKKG FAKFIDGFRR ADAEELGIDP  60
   61 NLSEAEKIAI MTANSPLTRS LKNRHLQMIA IGGSIGTGLF VGSGSSLHTG GPAGLLIAYI 120
  121 LIGTMIYCTV MSLGELAVTF PVSGAFVTYN SRFIDPSWGF AMAWNYAMQW LVVLPLELVA 180
  181 AAMTVKYWDA KTNSAAFVVI FYVLIVAINF FGVRGYGEAE FIFSAVKVLA VLGFIILGIV 240
  241 LCAGGGPQGG YIGGKNWYIE GAPFPNGAKG VITVFVNAAF AFAGTELCGL AAAETENPRK 300
  301 SLPKACKQVF WRITLFYVIC LTLVGLLVPW NDERLLGSSS ADASASPFVI SIRNAGIKGL 360
  361 PSVMNVVIMI AVLSVGNSSV YGSSRTLAAL AASNQAPKIF GYIDKQGRPL VGIIAQLLVG 420
  421 LLCFLAASDK QGEVFNWLLA LSGLSSIFTW GSINVCLIRF RRALAAQGRD TGELVFTSQV 480
  481 GVIGAIWGAF LNTVVLCLQF WIAVWPLHSS PSAEAFFSAY LTVPVVIVFY VGHKLWTKNW 540
  541 QVYICAKDID IDTGRRELDL DLVKQEVAEE KAYIASLPFY RRVYNAWC