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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: orf19.6979
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.46
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKNKLSSLG NHGTTTTSSL SSSSSISNNT SIARIIFVFS NILKLVQSIP IGHITHGNVG  60
   61 GDYSTETKRP VLTPEEFYMN LFTSIFLVLA GGVFAGLTLG LMGQDEVYLK VIAHSGDSTE 120
  121 RKHAKKVLQL IGRGKHWVLV TLLLSNVITN ETLPIVLDRC LGGGWPAVVT STVSIVIFGE 180
  181 IIPQSICVRY GLQVGSLFAP FVLVLMYIMY PVAYPCAMLL DHILGEDHGT VYKKSGLKTL 240
  241 VTLHKTMGVE RLNQDEVTII SAVLDLKEKP VSSIMTPMDR VYTMSADALL DEKTVEEIFN 300
  301 AGFSRIPIHL PNEPTNFIGM LLVRVLISYD PEDALPVASF PLATLPETGL DTSCLNILNY 360
  361 FQEGKSHMIV VSENPGEPTG AVGVLTLEDV IEELIGEEIV DESDVYIDIN KNIKRKHPGP 420
  421 LAKRNLTSYL HTLYQRNSSS NPNSKRNSID SSVYRNANAN ANGNGGRVSP PLDISERLRQ 480
  481 GSESSQISYT TNNNNTKNRK QQDQNEVAGA AAATATAATN WKPKNPASNP LETKKKFVTI 540
  541 KRPDQDKIES MKKITSPKLV PTQVGTIYST EKGALEEAHR RSLDEREHGP KFLLPMEREG 600
  601 DVSEINQQNY HGENGSHHHI DIPMNGNGNG NGNDNHNQAN DSNGSHTGNI DIPIPEYQES 660
  661 RSYKTGGIVE SVVNVQGVSK VIIENVTDAD DDEDEIALAI ENLSSNDNNN KKHKLKKSKK 720
  721 SKKKSKKSPS STLKSVTTSL NDDDVNDVND DQTVEQTQSL LHSGNGSRNS SIGSNTSNNK 780
  781 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle