YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.6976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.94
Transmembrane Helix	65	84	0.95
Non-Cytoplasmic	85	116	0.88
Transmembrane Helix	117	137	0.83
Cytoplasmic	138	147	0.85
Transmembrane Helix	148	168	0.95
Non-Cytoplasmic	169	178	0.86
Transmembrane Helix	179	202	0.90
Cytoplasmic	203	211	0.84
Transmembrane Helix	212	232	0.91
Non-Cytoplasmic	233	266	0.96
Transmembrane Helix	267	289	0.87
Cytoplasmic	290	386	0.94
Transmembrane Helix	387	411	0.88
Non-Cytoplasmic	412	427	0.88
Transmembrane Helix	428	447	0.95
Cytoplasmic	448	467	0.90
Transmembrane Helix	468	489	0.93
Non-Cytoplasmic	490	495	0.80
Transmembrane Helix	496	518	0.79
Cytoplasmic	519	525	0.82
Transmembrane Helix	526	549	0.84
Non-Cytoplasmic	550	559	0.78
Transmembrane Helix	560	581	0.91
Cytoplasmic	582	613	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSVEPDIES EALLEIAAND AYQAIIEEEE EDVDEANSSQ DEDVIWLREQ IENNKAISWI  60
   61 NRPSVYILGL VICIFMIAFA STIGVKQIIL FKLACNTVAN SKGYCDPIET QVLVSSYEMY 120
  121 SMVGGTLVSL IPVAKAGELS DIYGRKPFFI AMFVSATTSH LCSYLIFHHY NTFPFKLLLG 180
  181 AQWISSICGG MIMVPALIGS YISDIVESQG RIYALGLGMS SLFIGQSLGP MFGNWINSIG 240
  241 KHLNQEQKEK IGIRAITTLS SILPSEFFLL KIEIIIDIII CIYVITLFPE SRNAKARAKS 300
  301 RANSITSSRS SNSNSNSNSS TRGGVGVFIG TAGDAVDQLQ ELNNQQQSSS KSKLSMFFNI 360
  361 FSPLVILTYP TNLINENGKH RASQYRFVVI SLIISQCINM MMIMTLGQIL IQYGIFVFDW 420
  421 SSEDVGNLLT VLASTRAIIL IVILPIFQNK ILKKKFKFRV LKKQLDMIDY SLMLIGYSVD 480
  481 FIFLILLVYT KSTTQVLTLG AFYSIGSIAH PTTQSTLLKF YPTSKIGVVF GANTLLHNIV 540
  541 GVVAPVMIMN FYSKTLKNGW PGAVFILYSL LVLIIIILVV VSKRVLKLNV NTTDERLIRS 600
  601 NSSVSLSRSN AAL