YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG10_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.64
Transmembrane Helix	14	35	0.87
Non-Cytoplasmic	36	70	0.65
Transmembrane Helix	71	85	0.35
Cytoplasmic	86	153	0.64
Transmembrane Helix	154	178	0.75
Non-Cytoplasmic	179	196	0.71
Transmembrane Helix	197	216	0.80
Cytoplasmic	217	239	0.87
Transmembrane Helix	240	259	0.92
Non-Cytoplasmic	260	274	0.86
Transmembrane Helix	275	296	0.92
Cytoplasmic	297	306	0.84
Transmembrane Helix	307	326	0.95
Non-Cytoplasmic	327	354	0.90
Transmembrane Helix	355	374	0.72
Cytoplasmic	375	381	0.60
Transmembrane Helix	382	404	0.86
Non-Cytoplasmic	405	425	0.77
Transmembrane Helix	426	445	0.85
Cytoplasmic	446	450	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIPSNDI YISIISKYVA IVIFLIFVII MFNNITHHLT QPYIDEIFHL RQCQTYCQYN  60
   61 FHHWDNKITT PPGLYILGFI YSEGIKILTR SSSTGGGGGG GHLTCFNDNV LRSINLIGGV 120
  121 VILPRILQQF HNGWSKNSKN QFFWSINIIS QPLLFTYYFL FYTDVSSTIL IILSLGLINY 180
  181 KLLQYPMLSA LVGFMSLWFR QTNIIWIAFI ASIFIDRQIK IKTGVIDRIR QFIMKSLTNW 240
  241 NKLLGYIVNI ILFVIFLKLN GGITLGDNDN HQIELHIVQV FYCFTFITFF TIPNWLNKST 300
  301 IKKYYNFIIN HIILNLVIGL IIWYIMENFT IVHPFLLADN RHYAFYIYKR LLSQSYLKPL 360
  361 ILMAYHFSSF QIISSLIKGG QLSFIGIFSY LIAVGLTLIP SPLFEPRYYI TPLIIFNLYI 420
  421 NHPHNLLEFI WLNSINLITS YIFLHKGIIW