YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1403, orf1...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASETLSTTD INDNSANNDV EQDITSTTTT TTNNNSVNIP AKPNDYEALF KKLDIEKTGE  60
   61 ITFLDFKRAL KKFNHPINES PELLLKVFNS FDSNHDKKID FKDFKEYLKT TDDQILKGFN 120
  121 QLDQDNDGRL NKSDFIRYLK ESLHVKPSVA NIDLLFKQLD SNEDGYINYD EFREFLLLVP 180
  181 RLQGSRIKTA FTFLFEEYDI NSDGDVTLIN QFLDGFKFFL AGGLAGVVSR TCTAPFDRIK 240
  241 VFLIARTDLS STILHSKQEI ARQIASGAET HVIEALRKKL AHAEMEQAAE LLAEEAKTTK 300
  301 SAAAARTAAS GVTTASAQNA KTIRSPIVQA VRTLWRQGGI KAFYVGNGLN VMKVFPESAM 360
  361 KFGSFEAAKR FFARIEGVND TTKISKISTY LAGGFGGVVA QLTVYPIDTL KFRLQCSNLD 420
  421 HPLNAISTAK EMLKDGGVKI FYRGIGVGLA GMFPYAALDL GTFSTIKKLL VKKYGNKDDQ 480
  481 SLPTYLTLSL GAFSGSFAAT IVYPVNLLRT RLQSQGTYAH PFRYEGFYDV FSKTVAREGY 540
  541 SGLWKGLVPN LAKVAPAVSI SYFVYESLIR RF

Type	Start	End	Confidence
Non-Cytoplasmic	1	389	0.64
Transmembrane Helix	390	405	0.31
Cytoplasmic	406	439	0.51
Transmembrane Helix	440	458	0.69
Non-Cytoplasmic	459	483	0.67
Transmembrane Helix	484	507	0.76
Cytoplasmic	508	572	0.58