YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1382, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.89
Transmembrane Helix	10	30	0.92
Non-Cytoplasmic	31	42	0.81
Transmembrane Helix	43	64	0.87
Cytoplasmic	65	76	0.71
Transmembrane Helix	77	95	0.94
Non-Cytoplasmic	96	103	0.76
Transmembrane Helix	104	123	0.93
Cytoplasmic	124	131	0.81
Transmembrane Helix	132	150	0.80
Non-Cytoplasmic	151	160	0.62
Transmembrane Helix	161	181	0.93
Cytoplasmic	182	196	0.71
Transmembrane Helix	197	216	0.89
Non-Cytoplasmic	217	238	0.67
Transmembrane Helix	239	256	0.48
Cytoplasmic	257	264	0.47
Transmembrane Helix	265	287	0.61
Non-Cytoplasmic	288	292	0.50
Transmembrane Helix	293	312	0.87
Cytoplasmic	313	326	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSLTYISIS GWLNILLQVF GGCCSNVFVL EDLLYNNKSE YSLGTLVTFS QFLITSILSI  60
   61 PISTKGFIRP TVPVSRWIFP VVLYFLTSLL NNLVWQFDIT VPMHIIFRSS GTVVTMLVGY 120
  121 FFGNKRYSKH QIVSSIFMTL GTIMATLPEG NSLSIEINIK FLTGILILTI ASVISAFMGL 180
  181 YSELIYKQYG NQWHESLFYN HFLALPLFVF VSPTIYREFG VVLQSKQVTL GAFKFPRQLL 240
  241 SLTVNVLTQF ICTKGVNMLA GETSALTVTV VLLVRKFVSL ILSVIFYGSY MSTSGMIGSI 300
  301 IVFGSAAYYS ISGISDRKIM ELKKET