YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8956, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPYQNSQN GYQQNNSYEL NNYPNKQYSS SNEDDFVQFM NEIQDINSQL DNYSNIINLI  60
   61 DNKQKNFLHG LDLNDEDTDY DSKQIENLVN EAQSLQLDLK NRIKNVQTQA VHSRDQTKVD 120
  121 QAETCRKRFL DLIQDYRLVE ARNKESTKEQ AARQYQIIKP DATDEEIKAV VEDGSQQYFQ 180
  181 QALMQSNRRG EARSVLNEVQ VRHRELLKLE KTMAELTQLF HDMEELVIEQ DQPIQQIEEQ 240
  241 VGTAQHDIEQ GVGHTNKAVK SAKSARKKKL WCFFICLLIV IILAVILGAY FGTRK

Type	Start	End	Confidence
Cytoplasmic	1	269	0.96
Transmembrane Helix	270	292	0.94
Non-Cytoplasmic	293	295	0.87