YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.8941, orf1...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWIFGKSST NNDNNTTTTT NDQSSIKQTL GFDPKEVADV NTIISTPGAI SASRLHPLAG  60
   61 LDKGIEYLDL EEEQLNTVEG SKGLIPSRSW TDDLCYGTGA VYLLGLGIGG LYGFQQGIKT 120
  121 LPESAPSKVK LNHILNNITK RGPFLGNSAG VLALTYNLID STIDGIREKH DDLNSVTAGA 180
  181 LAGALFKSSA GLKPMAYSSV MMAGAAGIWC GLKRFLQE

Type	Start	End	Confidence
Cytoplasmic	1	93	0.82
Transmembrane Helix	94	114	0.72
Non-Cytoplasmic	115	194	0.80
Transmembrane Helix	195	212	0.80
Cytoplasmic	213	218	0.54