YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PALH_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYWKNAWWVG TVYSSCEPIE LPEGMLISKQ YETYPITTVS KAIYKQMCYR NCIPVLNTNV  60
   61 GFVIDTFAKP LPIVSQSWRE FTKDSLRGSF AYSVVSIIYA IAVSAVIIWF LTIFVLTNYT 120
  121 IKPSWLLKTS TILSTVYILV VVIKSILILH GQQRDGYLHG AKLLSELNDY NPIQIIDLIV 180
  181 VLLLQINQVQ IIMRIFQRQK DKRMALLIGI VATLASQVIW AIAQFYTPAD ANEASDILPA 240
  241 FIYLVRIAMA LCYAAIITVF FISKIQIILA NKKIWLLTLL TFILIYSPVA FFVADVSNAF 300
  301 VYELSEIFSV VNYVIGVVIP WEWCNKFNLI MKAKEKEGVL GRRFYEDELY ELDRFELFVE 360
  361 EQMPEDEDNG DTHSDSPGNE LNGGAHHNSQ EQSDRLIGSN SPTNKPHNGN NTDPTSRFRQ 420
  421 LLTNTKDAFL TLTDNIIAAG FAIPRSVSVS TQSLTGRYRN NSTARTEYTK EVVPDFSPEM 480
  481 FLQPEGSSHI TETLSEQNAA PSTTNSNHRR RNVYVYSRKE VILDVSSDE

Type	Start	End	Confidence
Cytoplasmic	1	52	0.70
Transmembrane Helix	53	68	0.31
Non-Cytoplasmic	69	94	0.53
Transmembrane Helix	95	117	0.87
Cytoplasmic	118	125	0.50
Transmembrane Helix	126	150	0.80
Non-Cytoplasmic	151	172	0.58
Transmembrane Helix	173	192	0.57
Cytoplasmic	193	203	0.89
Transmembrane Helix	204	224	0.94
Non-Cytoplasmic	225	241	0.87
Transmembrane Helix	242	262	0.95
Cytoplasmic	263	273	0.86
Transmembrane Helix	274	294	0.94
Non-Cytoplasmic	295	303	0.77
Transmembrane Helix	304	324	0.74
Cytoplasmic	325	529	0.76