YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3167
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHRVVTVPR LHSVNNFNYF FHNTKRNLVI DQNFINNQYL LRKVLLPSLS GRVRHLTSHT  60
   61 SRISDNTSIG GLSSSSSVIE NVASKVLTCQ EPEAQSSQKT GIDPSDNTTN KHIPFKITPK 120
  121 DSQALKTQPV TLFPKSKAQL KNTCTAYVKL SKPNLTVLVT LSSICSYAIS PLSVSLQELM 180
  181 FLTVGTALCS GAANAINMGR EPEFDKQMPR TVGRPVVRGL ITPTQAYRFA AVSGAIGCGM 240
  241 LWFGVNPTVS LLGFSNIVLY AWLYTSMKRK SIINTWVGAV VGAIPPLMGW AASSSLAHPA 300
  301 AWCLAGLLYA WQFPHFNALS HGIAQQYKSA GYVMTAAENP RLNARVALRY SVLMFPLCFG 360
  361 LSYFGVTDWV FPFDSAIANG WLTYLAYVFW QQQEKNYKNG AKPTSEGLAL AGVHAKKLFW 420
  421 CSVWHLPAVL ILAMLHKKDQ WNRLFEHIGL KTRKIEGRLE V

Type	Start	End	Confidence
Cytoplasmic	1	154	0.73
Transmembrane Helix	155	171	0.55
Non-Cytoplasmic	172	178	0.58
Transmembrane Helix	179	198	0.70
Cytoplasmic	199	218	0.60
Transmembrane Helix	219	243	0.61
Non-Cytoplasmic	244	244	0.31
Transmembrane Helix	245	264	0.84
Cytoplasmic	265	271	0.86
Transmembrane Helix	272	292	0.90
Non-Cytoplasmic	293	297	0.70
Transmembrane Helix	298	319	0.78
Cytoplasmic	320	345	0.90
Transmembrane Helix	346	367	0.86
Non-Cytoplasmic	368	416	0.69
Transmembrane Helix	417	435	0.77
Cytoplasmic	436	461	0.78