YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1356
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSFLTTIT PSAYRALLST SNPSKRVIAI DATWYMPNNP KNAKQEFIKE RIPNSKFFDL  60
   61 DKYIDPTSPY PHMLPSNISI MEQAYKDLQL NLNDSIVVYD KLGIFSSPRA AWTFSLFGHP 120
  121 KVYLLDNYLN YKQSEYPIDG NPPPIEEKEQ NKGEIENLVN PVKLDQDQFN ENYKQQVIEY 180
  181 EELLDLVTKK KNNGYGLKDY LLLDARSLDR FIGKANEPRP GLSSGHIPGA INLPFNTLLT 240
  241 GNNNQFKNKQ EILEIFHEKN ILNGNGDGNG DDKIENLLTN YPKGIIVMCG TGVTAVILKF 300
  301 GIECILKLNV PVRVYDGSWT EWASRAPSEY IQKDI

Type	Start	End	Confidence
Signal Peptide	1	15	0.56
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	335	0.98