YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.11105, orf...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYSLRTLII SIVIGIITLF TIYTQISNSK SGYAPNLSTF DTSQVQFYDL ANYKGSANGW  60
   61 QYDERVLFCV PLRDAAPHLP MFFSHMKNLT YPHNLIDLAF LVSDSKDDTM GELKRHLSEI 120
  121 QKDPKLAFGE IEIFEKDFGQ VIGQGFSDRH GFAAQGPRRK LMARARNWLW TVAVKPYHSF 180
  181 VYWRDADVET VPPTILEDLM HHDKDVIVPN VWRPLPDWLG NQQPYDLNSW QESEGGLQLA 240
  241 DTLDEDACIV EGYVEYQTWR PHLAYLRDPY GDPEVEMDLD GIGGVSILTK ANVFRQGSHF 300
  301 PAFSFEKHAE TEAFGKLSKR MGFSVVGLPH YVIWHIYEPS SDDLKHMEWM ASEEVRQQEE 360
  361 AKIKKVYDKV WNKAFEDVQN NWDKERSKFL KNTDMSNVRK IKVDWSGVDD FDIDKNSHDD 420
  421 KKLADFNP

Type	Start	End	Confidence
Cytoplasmic	1	6	0.78
Transmembrane Helix	7	26	0.83
Non-Cytoplasmic	27	428	0.96