YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.3616, orf1...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFLQLLSH PTELKAVIQL FGFRQPLHPG KRDVNDKELV RCYELLNLTS RSFAAVIEEL  60
   61 HPELRDAVMI FYLVLRALDT IEDDMTIKSS IKIPLLREFD TKLNTKNWTF DGNGPNEKDR 120
  121 TVLVEFDKIL NVYHRLKPQY QDIIKSITFK MGNGMADYIL DEEFNVNGVA TVEDYNLYCH 180
  181 YVAGLVGEGL TNLFVLANFG DKTLTENNFA KADSMGLFLQ KTNIIRDYHE DLQDGRSFWP 240
  241 REIWSKYTEN LQDFHKVKTP AKEFAGVSCI NELVLNALGH VTDCLDYLSL VKDPSSFSFC 300
  301 AIPQVMAVAT LAEVYNNPKV LHGVVKIRKG TTCRLILESR TLPGVVKIFK EYIQVINHKS 360
  361 SVRDPNYLKI GIKCGEIEQY CEMIYPNKQA LPPSMKSLPE NKFTKIVASR ESIDLSVQRR 420
  421 IEQENFNCNV VLFGIGALIL SLIYFVLY

Type	Start	End	Confidence
Non-Cytoplasmic	1	425	0.60
Transmembrane Helix	426	447	0.89
Cytoplasmic	448	448	0.54