YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.1761, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSASNKKS IPTTSSSSTT TSAASSSVVL KEVKSTLTTT INNYFDTISA QPRLKLIDLF  60
   61 LIFLVLLGIL QFIYVLIIGN FPFNSFLGGF ISCVGQFVLL VSLRLQINDS TTTTTNKESD 120
  121 DQLELDEDKI ENGTTGGGNG RLFKEITPER SFGDFIFASL ILHFIVIHFI N

Type	Start	End	Confidence
Cytoplasmic	1	56	0.98
Transmembrane Helix	57	78	0.92
Non-Cytoplasmic	79	85	0.76
Transmembrane Helix	86	105	0.92
Cytoplasmic	106	150	0.96
Transmembrane Helix	151	170	0.89
Non-Cytoplasmic	171	171	0.93