YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.138, orf19...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPLKFTIV FTIIIQFITA ALLSFLLLGC IDTSSNYSNV YLLSYKFNQS SPLYDYLSTS  60
   61 SNSSITTTTT TNNNSTAIDE LSVKVGYMGV CLSSSSKDIS CTTYTGLDSF PKFSISMLSG 120
  121 DLDLVQLAQS FSNICHPRIL LATIILTLIG LIILCYCVIP IVPGKSIMKK LNAGLSFILL 180
  181 LLWGLGSMLQ HQAVVTSVEM MQQSSFQLLI GTRGGRAEAM TWTAFSFILM MFLSACLSWW 240
  241 MEIRMSKLNG KSSQHQQQPS VDTKI

Type	Start	End	Confidence
Cytoplasmic	1	6	0.86
Transmembrane Helix	7	31	0.77
Non-Cytoplasmic	32	138	0.97
Transmembrane Helix	139	162	0.91
Cytoplasmic	163	170	0.91
Transmembrane Helix	171	194	0.86
Non-Cytoplasmic	195	218	0.96
Transmembrane Helix	219	241	0.91
Cytoplasmic	242	265	0.97