YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.118, orf19...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAATTSFSS GFNNNNNADQ STDSSATISK SGNVASFKTT STTSTYQTNL TAIDTYGNEF  60
   61 KVPDYTIKDI LSAIPTHCYE RRLLQSLSYV FRDIFCMVVL GFIANNYIHL IPNQFIRFAA 120
  121 WTGYVWCQGL FGTGIWVLAH ECGHQAFSDY GSVNDFVGWV LHSYLLVPYF SWKFSHGKHH 180
  181 KATGHLTRDM VFVPKTKEEF LQNRGVKDLD DLLGDSPMYS LLTLIFQQTF GWISYLVANV 240
  241 SGQKYPGVSF LKLNHFNPNS LIFDKKDYWY ILLSDLGILL QFFNLYVWYQ SFGGFNLLVN 300
  301 YVLPYFLVNH WLVFITYLQH SDPQMPHYEA SQWTFARGAA ATIDREFGFV GKHIFHDIIE 360
  361 THVLHHYVSR IPFYNAREAS EAIKKVMGIH YQHSDENMWV SLWKSARWCQ FVDGNNGVLM 420
  421 YRNTNGFGVD PKKQTH

Type	Start	End	Confidence
Cytoplasmic	1	88	0.85
Transmembrane Helix	89	111	0.86
Non-Cytoplasmic	112	117	0.73
Transmembrane Helix	118	139	0.86
Cytoplasmic	140	267	0.59
Transmembrane Helix	268	289	0.83
Non-Cytoplasmic	290	296	0.69
Transmembrane Helix	297	318	0.78
Cytoplasmic	319	436	0.79