YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.7758, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.99
Transmembrane Helix	66	88	0.87
Non-Cytoplasmic	89	95	0.64
Transmembrane Helix	96	122	0.58
Cytoplasmic	123	142	0.63
Transmembrane Helix	143	165	0.83
Non-Cytoplasmic	166	173	0.75
Transmembrane Helix	174	193	0.94
Cytoplasmic	194	207	0.80
Transmembrane Helix	208	229	0.87
Non-Cytoplasmic	230	253	0.88
Transmembrane Helix	254	277	0.84
Cytoplasmic	278	293	0.91
Transmembrane Helix	294	315	0.91
Non-Cytoplasmic	316	345	0.93
Transmembrane Helix	346	365	0.86
Cytoplasmic	366	390	0.84
Transmembrane Helix	391	411	0.94
Non-Cytoplasmic	412	419	0.87
Transmembrane Helix	420	442	0.90
Cytoplasmic	443	462	0.88
Transmembrane Helix	463	487	0.85
Non-Cytoplasmic	488	495	0.89
Transmembrane Helix	496	518	0.93
Cytoplasmic	519	568	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFEVGEKYPV ESSSSSNDIE SRGVQPITSL KDNKSIGMIE KDNDDLSCEQ YSTCDEVKRD  60
   61 LKARHVSMIA IGGTIGTGLF ISTGSLLHTT GPVMSLISFL FVTTLAYSVT QSLGEMTTYI 120
  121 PVSGSFAQFI TRWVSKSCGA ANGWLYWFSW AITFALELSV VGQVIQYWTD AVPLAGWISI 180
  181 FFVLLTTFNL FPVKYYGEVE FWIASTKVIA IVGWLIYAFC MVCGAGKTGP VGFRYWRNGY 240
  241 AWGDGMIVSN NGKYAISFIN GLINAVFTFQ GTELVAVTAG EASPRAIRSA IKKVMFRILV 300
  301 FYVLCMLFIG LLVPYNDPKL TQDGGFTRNS PFLIAMENSG TKVLPHIFNA VIVTTIISAG 360
  361 NSNVYSGSRI LYGLAQAGVA PKFFLKTNKG GVPYFAVLFT AAFGALGYLA CSEDGNKAFT 420
  421 WLLNIIATAG LIAWGFISVS HVRFMNVLRK RGLSRDILPY KAFFMPYSAY YAIIIIFIVV 480
  481 LIQGFTVFWD FNASDFFTAY ISVILFVVLW IGFHFFFYGF GKDSFKWENI LIPLDDCDID 540
  541 SGVRDINDAE FDVPEPKNVW ERFWLLIA