YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68483507, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLFISTLF ILLVSLLFTY KPLTTRLNLF TRFISMSHST HPYQKELEVA TLAVKRASLL  60
   61 TKQLSDSIVQ TAKSGTLTKD DKSPVTIGDF ASQAIINHAI KLNFPNDEIV GEEDSRELQE 120
  121 NTGLADQMLQ LITKIQKETS GYNDIVGTLT DKNEVYQSID FGNSQGGSKG RFWALDPIDG 180
  181 TKGFLRGDQF AVCLALIEDG KVVLGVIGCP NLSENIVSNE EHSGVVGGLY SAVKGVGSFY 240
  241 SDLFKEGAEP LSQQKRIKMQ NHTNPSQLKV VEGVEKGHSS HSTQAEIKAK LGFDSATVAK 300
  301 QTINLDSQVK YCVLASGQAD IYLRLPVSDT YREKIWDHAA GNILIYESGG QVGDVTGSPL 360
  361 NFGNGRTLDS KGVIAANKEI FDKVIDAVTE VRK

Type	Start	End	Confidence
Signal Peptide	1	19	0.96
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	393	0.99