YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.88
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRTTSMRM ARLATAKATL SKRTFSLLAN ATTRYTAASS AAKAMTPITS IRGVKTINFG  60
   61 GTEEVVHERA DWPKERLLDY FKNDTFALIG YGSQGYGQGL NLRDNGLNVI IGVRKGSSWE 120
  121 AAVEDGWVPG ENLFEVDEAI SRGTIIMDLL SDAAQSETWF HIKPQLTEGK TLYFSHGFSP 180
  181 VFKDLTHVEP PSNIDVILAA PKGSGRTVRS LFKEGRGINS SYAVWNDVTG KAEEKAIAMA 240
  241 IAIGSGYVYK TTFEREVNSD LYGERGCLMG GIHGMFLAQY EVLRENGHTP SEAFNETVEE 300
  301 ATQSLYPLIG KYGMDYMYDA CSTTARRGAL DWYPRFKDAL KPVFEELYES VKNGSETKRS 360
  361 LEFNSRSDYK ERLEEEFQTI RNMEIWRVGK EVRKLRPENQ

Type	Start	End	Confidence
Signal Peptide	1	41	0.96
N-region	1	32
H-region	33	38
C-region	39	41
Cleavage Site	41	42
Non-Cytoplasmic	42	400	0.99