YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4118
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.96
Transmembrane Helix	77	97	0.93
Non-Cytoplasmic	98	105	0.78
Transmembrane Helix	106	124	0.92
Cytoplasmic	125	157	0.79
Transmembrane Helix	158	177	0.90
Non-Cytoplasmic	178	186	0.72
Transmembrane Helix	187	205	0.93
Cytoplasmic	206	212	0.66
Transmembrane Helix	213	233	0.90
Non-Cytoplasmic	234	269	0.73
Transmembrane Helix	270	293	0.89
Cytoplasmic	294	307	0.60
Transmembrane Helix	308	329	0.82
Non-Cytoplasmic	330	349	0.64
Transmembrane Helix	350	371	0.80
Cytoplasmic	372	446	0.75
Transmembrane Helix	447	469	0.88
Non-Cytoplasmic	470	477	0.72
Transmembrane Helix	478	497	0.68
Cytoplasmic	498	538	0.58
Transmembrane Helix	539	561	0.83
Non-Cytoplasmic	562	576	0.44
Transmembrane Helix	577	599	0.91
Cytoplasmic	600	608	0.47

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSPSTDKAP SIVELTPETY QQDVSSDSID LESGTKKLQN ESALQSHEYT TNIDETSSSN  60
   61 TASKLTYIQK LKIRFPYYRL AIDIFIGCFF TAWWLSIVIQ PKHRHQWLIP TVIWGMIMVR 120
  121 LITWHIKILP WLLNKVKIVW DFFTGYVYKV LSKKYQRLIT GAVITVGVIL LGTFVPSETE 180
  181 YSKRKDRAIS FFGCIVAIFL LFVTSKAPSK INWNAVIGGM LMQFIIALFV LRTKCGYDVF 240
  241 NFISTLAREL LGFAKDGVAF LTNKDVSQLG MFFFTVLPSV AFFVAFIHIW YYFGVIQWAI 300
  301 RKFAYFFFWT LRVSGAEAIT AAASPFIGIG ESAILIKDLM PYLTKAELHQ IMTSGFSTIS 360
  361 GAVLVGYIGL GLNPQALVSS CVMSIPASLA VSKLRYPELE NPISSGTVMI PKVEDPEEAR 420
  421 EKSKDEPQNV LQAFSNGATL GLRIAGTMMI QCMCIIGLVA LCNGILTWFG NYWNIDHLTL 480
  481 ELMLSYIFYP IGFLLGTPRN EILLVSKLIA YKFIQNEYVA YNLLTNEAPY NEMSKRGTLI 540
  541 ATYACCGFAN LGSLGITLGV LNTLTNNSRA KDISSSIISA LFCGAIATML SAAIAGMVMH 600
  601 DLNTFHIN