YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4090, orf1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	78	0.96
Transmembrane Helix	79	97	0.91
Non-Cytoplasmic	98	107	0.74
Transmembrane Helix	108	128	0.95
Cytoplasmic	129	139	0.80
Transmembrane Helix	140	157	0.94
Non-Cytoplasmic	158	164	0.70
Transmembrane Helix	165	187	0.92
Cytoplasmic	188	196	0.91
Transmembrane Helix	197	219	0.91
Non-Cytoplasmic	220	226	0.81
Transmembrane Helix	227	247	0.94
Cytoplasmic	248	302	0.98
Transmembrane Helix	303	326	0.88
Non-Cytoplasmic	327	338	0.85
Transmembrane Helix	339	359	0.92
Cytoplasmic	360	370	0.81
Transmembrane Helix	371	389	0.95
Non-Cytoplasmic	390	396	0.64
Transmembrane Helix	397	419	0.87
Cytoplasmic	420	428	0.82
Transmembrane Helix	429	450	0.93
Non-Cytoplasmic	451	459	0.71
Transmembrane Helix	460	480	0.95
Cytoplasmic	481	501	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRFSTTANE SHHSDRQFQQ SDETQSNNPI FIGDNGIALE TISSNTSDDS SRSGYSTQES  60
   61 SHLMTSTNPP KNRWRIASTI LFNFTSGFSD AAPGALLPHI ESYYNINYAI TSCIWVSNAV 120
  121 GFILIAAFSH KIQPWFGKRN SLPIGNALSC VMYAIVASGT KFPVVVLGFF FGGCGLAMVA 180
  181 AQCNIFLSRL DKQSKYLAYY HGSYGIGATI SPLIATSIVN SGVSWNLFYL ILLGLMVITA 240
  241 INLYFSFQNA DEDLKPWDHD EAVHSSSTSV ELENLDSRIT NTTNNANTTT QTSEMVLALQ 300
  301 SHVTWLIAFF CLCYQGAEVS LAGWIVTFLL DYRHSDANST GYIASGLWGG LTLGRLLLTR 360
  361 PIHKYIGLRR GVFIVSLVSI ILVLLTWVVP VIVVEAVLVS LAGIFIGPNY PLLITYAALP 420
  421 GLIPRKIQVV SITIMTAFGS TGGALFPFIV GVLSQKVGTF VVLPVFIVLY AFMVFLWMLL 480
  481 PNTERQNKQN QTQLNFWERI W