YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.586, orf19...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSRPKLLSF DAFAKTVEDA RIKTTSGGII TLICILITLV LIRNEYVDYT TIITRPELVV  60
   61 DRDINKQLDI NLDISFINLP CDLISIDLLD VTGDLSLNII DSGLKKIRLL KNKQGDVIVN 120
  121 EIEDDEPAFN NDIELSDLAK GLPEGSDENA YCGSCYGALP QDKKQFCCND CNTVRRAYAE 180
  181 KHWSFYDGEN IEQCEKEGYV GRLRERINNN EGCRIKGTTK INRVSGTMDF APGASFTREG 240
  241 RHFHDLSLYT KYPDKFNFDH IINHLSFGEM PVDGQADELF DSIHPLDDHQ FMLHKKAHLV 300
  301 SYYLKVVATR FESLDYKNRI DTNQFSVITH DRPLVGGKDE DHQHTLHARG GIPGVNFNFD 360
  361 ISPLKIINRQ QYAKTWSGFV LGVISSIAGV LMVGTLLDRS VFAAQQAIKG KKDI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.72
Transmembrane Helix	21	42	0.67
Non-Cytoplasmic	43	375	0.87
Transmembrane Helix	376	397	0.87
Cytoplasmic	398	414	0.75