YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	orf19.4447, orf1...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIELEEPPL TQDNKQVAKD LFAGTMGGIA QVLVGQPFDT VKVRLQSAPE GTYNGSLDVI  60
   61 KKLLATEGPR GFYKGTLTPL VGVGACVSVQ FSVNEYMKRY YDKRLNGQPM SIIDYFVCGG 120
  121 VAGFANGFLA SPIEHIRIRL QTQTGNSKNF NGPLDCAKKI YQTDGIKGIY KGLVPTLIRE 180
  181 SVGLGIYFAT YEALIARELK THPKLTRNDI SAWKLCTFGG LSGYTLWIGI YPIDVIKSKL 240
  241 QTDSIKDPKY RSSLAVIKDV FRTQGIRGFY KGFLPTILRA APANGATFAV FEVTIRLLG

Type	Start	End	Confidence
Cytoplasmic	1	70	0.81
Transmembrane Helix	71	93	0.64
Non-Cytoplasmic	94	111	0.70
Transmembrane Helix	112	130	0.85
Cytoplasmic	131	209	0.69
Transmembrane Helix	210	231	0.51
Non-Cytoplasmic	232	299	0.66